Æon Flux (2005)

In a dystopian future, Æon Flux, a skilled assassin, discovers that she and her rebel group are being manipulated by a council working towards a coup d'état. As she questions her origins and the government's leader, she learns that everyone in their city is a clone and that nature has corrected the infertility problem. Æon must confront the truth and fight against both her former allies and the ruling family to bring about a new beginning.